Variant report

Variant	rs10017180
Chromosome Location	chr4:78017533-78017534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78016870..78019956-chr4:78074951..78081229,6	MCF-7	breast:
2	chr4:78015322..78018210-chr4:78060789..78063624,2	K562	blood:
3	chr4:78016448..78019261-chr4:78148834..78151500,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138764	Chromatin interaction

rs_ID	r²[population]
rs10000055	1.00[AMR][1000 genomes]
rs10002970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003222	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs10006033	1.00[LWK][hapmap]
rs10006616	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs10013521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017391	1.00[AMR][1000 genomes]
rs10024538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10049647	1.00[AMR][1000 genomes]
rs10518161	1.00[AMR][1000 genomes]
rs11559161	1.00[LWK][hapmap]
rs17002303	1.00[AMR][1000 genomes]
rs17002311	1.00[AMR][1000 genomes]
rs17002313	1.00[AMR][1000 genomes]
rs17002323	1.00[AMR][1000 genomes]
rs17002334	1.00[LWK][hapmap]
rs17002346	1.00[LWK][hapmap]
rs17002511	1.00[ASW][hapmap]
rs17002520	1.00[ASW][hapmap]
rs28638241	1.00[AMR][1000 genomes]
rs28639925	1.00[AMR][1000 genomes]
rs28657683	1.00[AMR][1000 genomes]
rs28670872	1.00[AMR][1000 genomes]
rs28681642	1.00[AMR][1000 genomes]
rs28682963	1.00[AMR][1000 genomes]
rs28697276	1.00[AMR][1000 genomes]
rs9307223	1.00[AMR][1000 genomes]
rs9884835	1.00[AMR][1000 genomes]
rs9991713	1.00[AMR][1000 genomes]
rs9992021	1.00[AMR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77998800-78020600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:78014600-78019000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:78014800-78018600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:78015000-78021200	Weak transcription	Primary T cells from cord blood	blood
5	chr4:78015200-78019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:78015600-78019400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:78016400-78017800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:78016600-78018600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:78016800-78017600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:78016800-78018600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:78016800-78019800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:78016800-78021400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:78016800-78021600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:78017000-78018000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:78017000-78018400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:78017000-78021200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:78017000-78021200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:78017000-78021200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:78017000-78021400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:78017000-78021400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:78017000-78021400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr4:78017000-78021600	Weak transcription	Primary B cells from cord blood	blood
23	chr4:78017200-78019600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:78017200-78021000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr4:78017200-78021400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:78017200-78021400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr4:78017200-78025800	Weak transcription	HMEC	breast
28	chr4:78017200-78026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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