The 2.0 version of rSNPBase

Variant report

Variant rs28638241
Chromosome Location chr4:77900878-77900879
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:77876800-77906000 Weak transcription Breast Myoepithelial Primary Cells Breast
2 chr4:77879600-77904200 Weak transcription Gastric stomach
3 chr4:77882200-77905200 Weak transcription Fetal Intestine Large intestine
4 chr4:77884800-77904200 Weak transcription Pancreas Pancrea
5 chr4:77890200-77901400 Weak transcription Colon Smooth Muscle Colon
6 chr4:77891200-77905600 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr4:77891600-77907000 Weak transcription ES-WA7 Cell Line embryonic stem cell
8 chr4:77891800-77901800 Weak transcription Brain Hippocampus Middle brain
9 chr4:77891800-77905200 Weak transcription Brain Substantia Nigra brain
10 chr4:77892000-77902000 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr4:77893000-77906600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr4:77893200-77918800 Weak transcription A549 lung
13 chr4:77893400-77901600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr4:77893400-77901800 Weak transcription H1 Cell Line embryonic stem cell
15 chr4:77893600-77901800 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr4:77893600-77902400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr4:77893800-77901600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr4:77893800-77901600 Weak transcription Fetal Brain Male brain
19 chr4:77894000-77901600 Weak transcription HUES6 Cell Line embryonic stem cell
20 chr4:77894200-77901400 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr4:77894200-77901600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr4:77894600-77903000 Weak transcription Esophagus oesophagus
23 chr4:77894800-77904200 Weak transcription Fetal Intestine Small intestine
24 chr4:77895200-77905600 Weak transcription Stomach Smooth Muscle stomach
25 chr4:77896200-77901400 Weak transcription Psoas Muscle Psoas
26 chr4:77896200-77905000 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr4:77896400-77901400 Weak transcription Fetal Stomach stomach
28 chr4:77896400-77903400 Weak transcription Fetal Muscle Trunk muscle
29 chr4:77897800-77901400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr4:77897800-77905400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr4:77898000-77901400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr4:77898400-77903600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr4:77898800-77901400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
34 chr4:77899000-77908400 Enhancers Adipose Nuclei Adipose
35 chr4:77899200-77901600 Weak transcription HUES64 Cell Line embryonic stem cell
36 chr4:77899200-77903000 Enhancers Rectal Mucosa Donor 31 rectum
37 chr4:77899200-77907600 Enhancers Placenta Placenta
38 chr4:77899400-77901400 Enhancers Brain Germinal Matrix brain
39 chr4:77899400-77901600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr4:77899400-77901800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr4:77899600-77901200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr4:77899600-77901200 Weak transcription Fetal Lung lung
43 chr4:77899600-77901400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
44 chr4:77899600-77901400 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr4:77899600-77901400 Genic enhancers HSMMtube muscle
46 chr4:77899600-77902200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr4:77899600-77902800 Weak transcription K562 blood
48 chr4:77899600-77903600 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr4:77899600-77904200 Weak transcription Brain Anterior Caudate brain
50 chr4:77899600-77904200 Enhancers Osteobl bone

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Last update: Aug 31, 2015