The 2.0 version of rSNPBase

Variant report

Variant rs28657683
Chromosome Location chr4:77925944-77925945
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:77903600-77936000 Weak transcription Esophagus oesophagus
2 chr4:77915600-77936800 Weak transcription Brain Substantia Nigra brain
3 chr4:77916000-77928000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr4:77916200-77928200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr4:77917400-77928000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr4:77917400-77928000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr4:77917400-77928000 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr4:77917400-77928400 Strong transcription Fetal Muscle Trunk muscle
9 chr4:77918400-77937400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr4:77919800-77928000 Weak transcription Primary monocytes fromperipheralblood blood
11 chr4:77919800-77928600 Weak transcription Brain Hippocampus Middle brain
12 chr4:77920000-77928200 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr4:77920000-77932200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr4:77920200-77927200 Weak transcription HepG2 liver
15 chr4:77920200-77928200 Weak transcription Fetal Thymus thymus
16 chr4:77920200-77928200 Weak transcription Lung lung
17 chr4:77920200-77928200 Weak transcription Pancreas Pancrea
18 chr4:77920200-77928400 Weak transcription Primary B cells from peripheral blood blood
19 chr4:77920200-77940200 Weak transcription Spleen Spleen
20 chr4:77920400-77927800 Weak transcription Ovary ovary
21 chr4:77920400-77928000 Weak transcription Primary T cells fromperipheralblood blood
22 chr4:77920400-77928000 Weak transcription Brain Inferior Temporal Lobe brain
23 chr4:77920400-77928200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr4:77920400-77928400 Weak transcription Fetal Intestine Small intestine
25 chr4:77920400-77936000 Weak transcription Gastric stomach
26 chr4:77920400-77936200 Weak transcription Colonic Mucosa Colon
27 chr4:77921000-77926800 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr4:77921000-77928200 Weak transcription Primary B cells from cord blood blood
29 chr4:77921800-77931200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
30 chr4:77922000-77926800 Weak transcription Liver Liver
31 chr4:77922000-77927000 Weak transcription A549 lung
32 chr4:77922200-77927400 Weak transcription K562 blood
33 chr4:77922400-77926600 Weak transcription Fetal Intestine Large intestine
34 chr4:77922400-77926800 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr4:77923400-77932200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr4:77923600-77926600 Weak transcription Duodenum Mucosa Duodenum
37 chr4:77923600-77927600 Weak transcription Hela-S3 cervix
38 chr4:77923600-77928000 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr4:77923800-77928000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr4:77923800-77928000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
41 chr4:77924000-77927000 Weak transcription Primary hematopoietic stem cells blood
42 chr4:77924000-77927600 Strong transcription Primary hematopoietic stem cells short term culture blood
43 chr4:77924000-77928000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr4:77924000-77928200 Weak transcription ES-WA7 Cell Line embryonic stem cell
45 chr4:77924200-77926600 Weak transcription Brain Germinal Matrix brain
46 chr4:77924200-77926800 Weak transcription NHEK skin
47 chr4:77924200-77928000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr4:77924200-77928000 Weak transcription Brain Angular Gyrus brain
49 chr4:77924200-77928200 Strong transcription Placenta Placenta
50 chr4:77924400-77926400 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015