Variant report

Variant	rs10018451
Chromosome Location	chr4:101985327-101985328
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101980576..101984487-chr4:101984933..101987688,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10003855	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019194	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020845	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025768	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027131	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13328021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030727	1.00[ASN][1000 genomes]
rs28360801	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396919	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28458475	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470872	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473322	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28535640	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28553415	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28564838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654209	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879734	1.00[ASN][1000 genomes]
rs6824097	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826912	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681014	1.00[ASN][1000 genomes]
rs7356517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
6	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
7	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
10	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:101959600-101986800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:101959600-101990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:101959600-102003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:101960800-101995000	Weak transcription	HSMM	muscle
15	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:101961000-102024600	Weak transcription	NHEK	skin
19	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
20	chr4:101961600-101995200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:101962200-102000200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:101964200-101987800	Weak transcription	HSMMtube	muscle
23	chr4:101966600-102003000	Weak transcription	Primary T cells from cord blood	blood
24	chr4:101966600-102007800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:101966800-101992200	Weak transcription	Ovary	ovary
26	chr4:101966800-102007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:101971000-101986000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr4:101971800-101986800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:101971800-102000000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:101972200-101985800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:101972200-101989000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:101973400-101988200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:101976600-101988000	Weak transcription	Brain Angular Gyrus	brain
34	chr4:101976600-101988200	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:101977400-101988400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:101977800-101988000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:101978000-101997600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:101978000-102024600	Weak transcription	Left Ventricle	heart
39	chr4:101978200-102002600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:101978400-101986200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr4:101978400-102023000	Weak transcription	NHLF	lung
42	chr4:101978600-101986000	Weak transcription	Fetal Brain Female	brain
43	chr4:101978600-101986400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr4:101979200-101988400	Weak transcription	Brain Anterior Caudate	brain
45	chr4:101979400-101997200	Weak transcription	Liver	Liver
46	chr4:101980000-102023200	Weak transcription	NHDF-Ad	bronchial
47	chr4:101980800-102004600	Strong transcription	Primary B cells from cord blood	blood
48	chr4:101981400-101985800	Weak transcription	Psoas Muscle	Psoas
49	chr4:101981600-102010600	Weak transcription	Aorta	Aorta
50	chr4:101981800-102025000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links