Variant report

Variant	rs6826912
Chromosome Location	chr4:101945139-101945140
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10003855	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008256	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018451	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019194	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020845	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022217	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023000	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025768	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026319	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026659	0.88[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027131	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034707	0.83[EUR][1000 genomes]
rs13328021	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030727	0.88[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396919	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449812	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28458475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28535640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28553415	0.87[EUR][1000 genomes]
rs28564838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668844	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879734	1.00[ASN][1000 genomes]
rs6824097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681014	1.00[ASN][1000 genomes]
rs7356517	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993215	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
3	chr4:101940800-101958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:101941000-101960200	Weak transcription	Colonic Mucosa	Colon
5	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
6	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:101941600-101959400	Weak transcription	HepG2	liver
9	chr4:101941800-101951400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:101941800-101953000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:101941800-101959200	Weak transcription	Left Ventricle	heart
12	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:101942200-101946800	Weak transcription	Thymus	Thymus
14	chr4:101942200-101953000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:101942400-101952000	Weak transcription	Hela-S3	cervix
16	chr4:101942400-101960200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:101942600-101951000	Weak transcription	Dnd41	blood
19	chr4:101942600-101953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:101942600-101966800	Weak transcription	Gastric	stomach
21	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:101942800-101946200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr4:101942800-101947200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:101942800-101949800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:101942800-101953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:101942800-101959600	Weak transcription	Lung	lung
28	chr4:101943000-101945400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:101943000-101947200	Weak transcription	Primary T cells from cord blood	blood
30	chr4:101943000-101951200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:101943000-101952800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:101943000-101954000	Weak transcription	Brain Germinal Matrix	brain
33	chr4:101943000-101959000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:101943000-101961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr4:101943200-101945400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:101943200-101947400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:101943200-101949600	Weak transcription	Brain Anterior Caudate	brain
38	chr4:101943200-101949600	Weak transcription	HSMMtube	muscle
39	chr4:101943200-101950200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:101943200-101953200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:101943200-101959200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
44	chr4:101943400-101946000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:101943400-101946800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr4:101943400-101948400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr4:101943400-101949000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr4:101943400-101952800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr4:101943400-101953200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:101943400-101959000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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