Variant report

Variant	rs10019194
Chromosome Location	chr4:101954034-101954035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101945503..101948247-chr4:101953002..101956027,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10003855	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008256	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018451	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020845	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022217	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027131	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034707	0.83[EUR][1000 genomes]
rs13328021	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030727	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396919	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449812	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28458475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28535640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28553415	0.87[EUR][1000 genomes]
rs28564838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668844	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879734	1.00[ASN][1000 genomes]
rs6824097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826912	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681014	1.00[ASN][1000 genomes]
rs7356517	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
3	chr4:101940800-101958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:101941000-101960200	Weak transcription	Colonic Mucosa	Colon
5	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
6	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:101941600-101959400	Weak transcription	HepG2	liver
9	chr4:101941800-101959200	Weak transcription	Left Ventricle	heart
10	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:101942400-101960200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:101942600-101966800	Weak transcription	Gastric	stomach
14	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:101942800-101959600	Weak transcription	Lung	lung
17	chr4:101943000-101959000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:101943000-101961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:101943200-101959200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
22	chr4:101943400-101959000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:101943400-101964200	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:101943400-101967200	Weak transcription	Fetal Brain Male	brain
25	chr4:101943600-101958800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:101943800-101958200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:101943800-101958800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:101943800-101960800	Weak transcription	Esophagus	oesophagus
29	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
30	chr4:101944000-101954800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:101944000-101958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:101944000-101959000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr4:101944000-101962000	Weak transcription	A549	lung
34	chr4:101944000-101964600	Weak transcription	NHLF	lung
35	chr4:101944400-101959200	Weak transcription	NHDF-Ad	bronchial
36	chr4:101944400-101968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
38	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
39	chr4:101945400-101961000	Weak transcription	Fetal Brain Female	brain
40	chr4:101945400-101961600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr4:101945800-101960400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:101947600-101955200	Weak transcription	Thymus	Thymus
45	chr4:101947600-101958000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr4:101947800-101958200	Weak transcription	HMEC	breast
47	chr4:101947800-101959200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:101948000-101956800	Weak transcription	NHEK	skin
50	chr4:101948000-101958600	Weak transcription	Muscle Satellite Cultured Cells	--

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