Variant report
| Variant | rs72681014 |
|---|---|
| Chromosome Location | chr4:101929473-101929474 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10003855 | 1.00[ASN][1000 genomes] |
| rs10008256 | 1.00[ASN][1000 genomes] |
| rs10018451 | 1.00[ASN][1000 genomes] |
| rs10019194 | 1.00[ASN][1000 genomes] |
| rs10020845 | 1.00[ASN][1000 genomes] |
| rs10022217 | 1.00[ASN][1000 genomes] |
| rs10023000 | 1.00[ASN][1000 genomes] |
| rs10025768 | 1.00[ASN][1000 genomes] |
| rs10026319 | 1.00[ASN][1000 genomes] |
| rs10026659 | 1.00[ASN][1000 genomes] |
| rs10027131 | 1.00[ASN][1000 genomes] |
| rs13328021 | 1.00[ASN][1000 genomes] |
| rs17030727 | 1.00[ASN][1000 genomes] |
| rs28360801 | 1.00[ASN][1000 genomes] |
| rs28376904 | 1.00[ASN][1000 genomes] |
| rs28396919 | 1.00[ASN][1000 genomes] |
| rs28449812 | 1.00[ASN][1000 genomes] |
| rs28458475 | 1.00[ASN][1000 genomes] |
| rs28470872 | 1.00[ASN][1000 genomes] |
| rs28473322 | 1.00[ASN][1000 genomes] |
| rs28535640 | 1.00[ASN][1000 genomes] |
| rs28564838 | 1.00[ASN][1000 genomes] |
| rs28590461 | 1.00[ASN][1000 genomes] |
| rs28633419 | 1.00[ASN][1000 genomes] |
| rs28648715 | 1.00[ASN][1000 genomes] |
| rs28654209 | 1.00[ASN][1000 genomes] |
| rs28668844 | 1.00[ASN][1000 genomes] |
| rs28704078 | 1.00[ASN][1000 genomes] |
| rs28879734 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6824097 | 1.00[ASN][1000 genomes] |
| rs6826912 | 1.00[ASN][1000 genomes] |
| rs7356517 | 1.00[ASN][1000 genomes] |
| rs9993215 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931418 | chr4:101500167-102443207 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:101927400-101930400 | Weak transcription | GM12878-XiMat | blood |
| 2 | chr4:101929400-101929600 | Enhancers | Primary T regulatory cells fromperipheralblood | blood |
