Variant report

Variant	rs10026319
Chromosome Location	chr4:101975635-101975636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10003855	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019194	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020845	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023000	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025768	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026659	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027131	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034707	0.83[EUR][1000 genomes]
rs13328021	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030727	0.88[CEU][hapmap];1.00[CHD][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360801	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376904	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396919	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449812	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28458475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28535640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28553415	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28564838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668844	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879734	1.00[ASN][1000 genomes]
rs6824097	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826912	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681014	1.00[ASN][1000 genomes]
rs7356517	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993215	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
3	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
6	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
7	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
8	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:101958400-101981200	Weak transcription	Aorta	Aorta
13	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:101959400-101981400	Weak transcription	HMEC	breast
15	chr4:101959600-101984400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:101959600-101986800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:101959600-101990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:101959600-102003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:101960800-101995000	Weak transcription	HSMM	muscle
20	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:101961000-101980800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr4:101961000-101982600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:101961000-102024600	Weak transcription	NHEK	skin
26	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
27	chr4:101961400-101981000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:101961600-101995200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:101962000-101978400	Weak transcription	Osteobl	bone
30	chr4:101962200-101981400	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:101962200-102000200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:101964200-101987800	Weak transcription	HSMMtube	muscle
33	chr4:101966600-101975800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:101966600-101980800	Weak transcription	Adipose Nuclei	Adipose
35	chr4:101966600-101981000	Weak transcription	Dnd41	blood
36	chr4:101966600-102003000	Weak transcription	Primary T cells from cord blood	blood
37	chr4:101966600-102007800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr4:101966800-101978400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr4:101966800-101978600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:101966800-101982200	Weak transcription	NH-A	brain
41	chr4:101966800-101992200	Weak transcription	Ovary	ovary
42	chr4:101966800-102007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:101967000-101978000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr4:101967000-101978400	Weak transcription	Liver	Liver
45	chr4:101967200-101978600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr4:101968400-101977400	Weak transcription	Primary B cells from cord blood	blood
47	chr4:101968400-101977400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:101968400-101978600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:101971000-101986000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:101971800-101977400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links