Variant report

Variant	rs10027131
Chromosome Location	chr4:101940482-101940483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10003855	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008256	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018451	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10019194	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020845	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022217	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023000	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025768	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026319	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026659	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034707	0.89[EUR][1000 genomes]
rs13328021	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17030727	1.00[ASN][1000 genomes]
rs28360801	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376904	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396919	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449812	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28458475	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470872	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28473322	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28535640	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564838	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28590461	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633419	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648715	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28654209	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28668844	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28704078	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28879734	1.00[ASN][1000 genomes]
rs6824097	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826912	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681014	1.00[ASN][1000 genomes]
rs7356517	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993215	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101932000-101940800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:101932200-101940800	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:101935400-101940800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr4:101936200-101940600	Weak transcription	HepG2	liver
6	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
7	chr4:101937000-101942000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:101937200-101940800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:101937200-101943200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:101937400-101943400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:101938200-101943400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:101938600-101941000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr4:101939000-101942000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr4:101939400-101941400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:101939600-101941400	Enhancers	Primary B cells from peripheral blood	blood
16	chr4:101939600-101941400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr4:101939600-101941400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:101939600-101942000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:101940000-101940600	Enhancers	Primary B cells from cord blood	blood
20	chr4:101940000-101941000	Enhancers	Fetal Intestine Large	intestine
21	chr4:101940000-101941200	Enhancers	Fetal Intestine Small	intestine
22	chr4:101940000-101942000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:101940000-101943000	Enhancers	Primary hematopoietic stem cells	blood
24	chr4:101940000-101943000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr4:101940000-101943600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr4:101940200-101940600	Enhancers	Spleen	Spleen
27	chr4:101940200-101940600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr4:101940200-101940800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr4:101940200-101941200	Enhancers	Duodenum Mucosa	Duodenum
30	chr4:101940200-101941200	Flanking Active TSS	GM12878-XiMat	blood
31	chr4:101940200-101941600	Enhancers	NHEK	skin
32	chr4:101940200-101942600	Enhancers	Dnd41	blood
33	chr4:101940200-101943000	Enhancers	Primary T cells from cord blood	blood
34	chr4:101940200-101943000	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr4:101940200-101943000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr4:101940200-101943200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr4:101940200-101943400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr4:101940200-101943800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr4:101940200-101943800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:101940200-101944000	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr4:101940200-101944000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:101940200-101944200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr4:101940400-101940600	Enhancers	Small Intestine	intestine
44	chr4:101940400-101940800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:101940400-101942000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr4:101940400-101942000	Enhancers	HUVEC	blood vessel
47	chr4:101940400-101942200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr4:101940400-101943200	Enhancers	HSMMtube	muscle
49	chr4:101940400-101944000	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links