Variant report

Variant	rs1001882
Chromosome Location	chr10:26697582-26697583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10828989	0.88[EUR][1000 genomes]
rs17529213	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2050447	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2281	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2992257	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2992258	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2992264	0.86[EUR][1000 genomes]
rs2992265	0.86[EUR][1000 genomes]
rs2992267	0.86[EUR][1000 genomes]
rs2992297	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2992298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2992299	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2992326	0.91[EUR][1000 genomes]
rs2992327	0.91[EUR][1000 genomes]
rs3006785	0.85[EUR][1000 genomes]
rs3006803	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3006804	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3006805	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3006809	0.86[EUR][1000 genomes]
rs3006812	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3006814	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3006817	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3006820	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3006822	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3006824	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3006833	0.86[EUR][1000 genomes]
rs703003	0.86[AMR][1000 genomes]
rs703007	0.86[EUR][1000 genomes]
rs7901931	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs871367	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26696400-26699600	Enhancers	GM12878-XiMat	blood
2	chr10:26696800-26698400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:26697000-26697600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:26697000-26699600	Enhancers	A549	lung
5	chr10:26697400-26701800	Weak transcription	Monocytes-CD14+_RO01746	blood

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