Variant report

Variant	rs3006785
Chromosome Location	chr10:26739565-26739566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1001882	0.85[EUR][1000 genomes]
rs10047274	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs10764616	0.82[CHB][hapmap]
rs10764620	0.84[CHB][hapmap]
rs10828989	0.88[EUR][1000 genomes]
rs11015119	0.82[CHB][hapmap]
rs1360844	0.83[CHB][hapmap]
rs17529213	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2050447	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2281	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2992257	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2992258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2992264	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2992265	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2992267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2992297	0.84[EUR][1000 genomes]
rs2992298	0.85[EUR][1000 genomes]
rs2992326	0.91[EUR][1000 genomes]
rs2992327	0.91[EUR][1000 genomes]
rs3006803	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3006804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3006805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3006809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3006812	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006814	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3006817	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3006820	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006822	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006824	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006833	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4275518	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs703003	0.86[CEU][hapmap];0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs703007	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7901931	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs871367	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26728200-26745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26731200-26749600	Weak transcription	Spleen	Spleen
4	chr10:26735400-26742000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:26735800-26743600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:26738000-26739600	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:26738000-26740200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26738000-26744600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:26738200-26739600	Genic enhancers	Primary B cells from peripheral blood	blood
10	chr10:26738200-26740600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:26738200-26742600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:26738400-26741600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:26738400-26744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:26738600-26740600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr10:26738600-26740800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26738800-26740400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr10:26738800-26740600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:26738800-26741200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:26738800-26741200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:26738800-26742600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:26738800-26747400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26739000-26740400	Enhancers	Thymus	Thymus
23	chr10:26739000-26740600	Enhancers	Primary B cells from cord blood	blood
24	chr10:26739000-26740800	Genic enhancers	Dnd41	blood
25	chr10:26739000-26741800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:26739000-26742400	Enhancers	Primary T cells from cord blood	blood
27	chr10:26739000-26744600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:26739000-26745600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr10:26739000-26746400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:26739000-26747400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr10:26739000-26757000	Weak transcription	Liver	Liver
32	chr10:26739200-26739600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:26739200-26739600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:26739200-26740400	Weak transcription	GM12878-XiMat	blood
35	chr10:26739200-26742200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:26739200-26744800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr10:26739200-26746600	Genic enhancers	Fetal Thymus	thymus
38	chr10:26739400-26739800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
39	chr10:26739400-26743800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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