Variant report

Variant	rs703007
Chromosome Location	chr10:26757778-26757779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1001882	0.86[EUR][1000 genomes]
rs10828989	0.87[EUR][1000 genomes]
rs17529213	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2050447	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2281	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2992257	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2992258	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2992264	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2992265	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2992267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2992297	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2992298	0.86[EUR][1000 genomes]
rs2992326	0.90[EUR][1000 genomes]
rs2992327	0.90[EUR][1000 genomes]
rs3006785	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3006803	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3006804	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3006805	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3006809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3006812	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3006814	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3006817	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3006820	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3006822	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3006824	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3006833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs703003	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7901931	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs871367	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26746400-26763200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26750000-26759800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:26751800-26759600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr10:26751800-26763800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:26752200-26759600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:26752600-26760400	Weak transcription	Adipose Nuclei	Adipose
7	chr10:26753400-26758800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:26754400-26761800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:26754800-26759000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:26755600-26758000	Enhancers	Placenta	Placenta
11	chr10:26755600-26763200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:26756000-26757800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:26756400-26758000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr10:26756400-26762000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:26756600-26760000	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:26756600-26768000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:26756800-26758000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:26756800-26758000	Flanking Active TSS	GM12878-XiMat	blood
19	chr10:26756800-26758000	Enhancers	NH-A	brain
20	chr10:26756800-26758200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:26756800-26758800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:26757000-26757800	Enhancers	Liver	Liver
23	chr10:26757000-26757800	Enhancers	Osteobl	bone
24	chr10:26757000-26758000	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr10:26757000-26758000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:26757000-26758000	Enhancers	NHEK	skin
27	chr10:26757000-26758400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:26757200-26758000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:26757400-26757800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:26757400-26757800	Flanking Active TSS	Thymus	Thymus
31	chr10:26757400-26757800	Enhancers	HepG2	liver
32	chr10:26757400-26758000	Genic enhancers	Primary hematopoietic stem cells	blood
33	chr10:26757400-26758000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:26757400-26758000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr10:26757400-26758000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr10:26757400-26758000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:26757400-26758000	Flanking Active TSS	Dnd41	blood
38	chr10:26757400-26758400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr10:26757600-26757800	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
40	chr10:26757600-26758000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:26757600-26758000	Flanking Active TSS	Primary B cells from cord blood	blood
42	chr10:26757600-26758000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:26757600-26758000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
44	chr10:26757600-26758000	Flanking Active TSS	Fetal Thymus	thymus
45	chr10:26757600-26758000	Enhancers	Pancreas	Pancrea
46	chr10:26757600-26758000	Enhancers	Rectal Mucosa Donor 29	rectum
47	chr10:26757600-26758000	Enhancers	Spleen	Spleen
48	chr10:26757600-26758000	Flanking Active TSS	A549	lung

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