Variant report

Variant	rs3006814
Chromosome Location	chr10:26723799-26723800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:26723760-26723910	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
APBB1IP	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1001882	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10828989	0.92[EUR][1000 genomes]
rs17529213	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2050447	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2281	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2992257	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2992258	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2992264	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2992265	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2992267	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2992297	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2992298	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2992326	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2992327	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3006785	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3006803	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3006804	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3006805	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3006809	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3006812	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3006817	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3006820	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3006822	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3006824	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3006833	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs703003	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs703007	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7901931	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs871367	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26718400-26726400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26718800-26724000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:26719800-26725000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:26720000-26724800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:26720000-26725200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:26720400-26724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:26720600-26724600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:26720600-26725000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:26720600-26725000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:26720800-26724400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:26720800-26725200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:26721000-26724800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:26721000-26724800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:26721000-26726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:26721200-26724400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:26721200-26724800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:26722200-26725800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:26722400-26723800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:26722600-26726600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:26722600-26726600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:26722800-26724600	Weak transcription	Primary B cells from cord blood	blood
22	chr10:26722800-26724600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:26722800-26726600	Weak transcription	Osteobl	bone
24	chr10:26723000-26724400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:26723000-26724400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:26723000-26726000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:26723400-26723800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr10:26723400-26724400	Enhancers	Fetal Thymus	thymus
29	chr10:26723400-26726000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:26723600-26723800	Enhancers	Spleen	Spleen
31	chr10:26723600-26724400	Enhancers	Dnd41	blood

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