Variant report

Variant	rs3006812
Chromosome Location	chr10:26724082-26724083
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1001882	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10828989	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17529213	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2050447	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2992257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2992258	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2992264	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2992265	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2992267	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2992297	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2992298	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2992326	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2992327	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006785	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006803	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3006804	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3006805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3006809	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3006814	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3006817	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006820	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006822	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006824	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006833	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs703003	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs703007	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7901931	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs871367	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26718400-26726400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26719800-26725000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:26720000-26724800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:26720000-26725200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr10:26720400-26724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:26720600-26724600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:26720600-26725000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr10:26720600-26725000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:26720800-26724400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:26720800-26725200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:26721000-26724800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:26721000-26724800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:26721000-26726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:26721200-26724400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr10:26721200-26724800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26722200-26725800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:26722600-26726600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:26722600-26726600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:26722800-26724600	Weak transcription	Primary B cells from cord blood	blood
20	chr10:26722800-26724600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr10:26722800-26726600	Weak transcription	Osteobl	bone
22	chr10:26723000-26724400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:26723000-26724400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:26723000-26726000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:26723400-26724400	Enhancers	Fetal Thymus	thymus
26	chr10:26723400-26726000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:26723600-26724400	Enhancers	Dnd41	blood
28	chr10:26723800-26724200	Weak transcription	GM12878-XiMat	blood
29	chr10:26723800-26724800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:26723800-26727000	Weak transcription	Spleen	Spleen
31	chr10:26724000-26724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:26724000-26726400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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