Variant report

Variant	rs17529213
Chromosome Location	chr10:26744468-26744469
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26736286..26737854-chr10:26742388..26745034,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1001882	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10828989	0.83[EUR][1000 genomes]
rs2050447	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2281	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2992257	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2992258	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2992264	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2992265	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2992267	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2992297	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2992298	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2992326	0.86[EUR][1000 genomes]
rs2992327	0.86[EUR][1000 genomes]
rs3006785	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3006803	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3006804	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3006805	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3006809	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3006812	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3006814	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3006817	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3006820	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3006822	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3006824	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3006833	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs703003	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs703007	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901931	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs871367	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26728200-26745200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26728200-26757000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26731200-26749600	Weak transcription	Spleen	Spleen
4	chr10:26738000-26744600	Weak transcription	Adipose Nuclei	Adipose
5	chr10:26738400-26744600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:26738800-26747400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:26739000-26744600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:26739000-26745600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr10:26739000-26746400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:26739000-26747400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:26739000-26757000	Weak transcription	Liver	Liver
12	chr10:26739200-26744800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:26739200-26746600	Genic enhancers	Fetal Thymus	thymus
14	chr10:26739600-26744600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:26740800-26747200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:26742800-26746200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:26742800-26747400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:26742800-26747400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:26743000-26745800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:26743000-26746600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:26743000-26747400	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:26743200-26746200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr10:26743200-26746200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:26743400-26745200	Enhancers	Primary T cells from cord blood	blood
25	chr10:26743600-26744600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:26743600-26746200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr10:26743600-26746600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:26743800-26744600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:26743800-26744800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:26743800-26744800	Enhancers	Dnd41	blood
31	chr10:26743800-26745400	Genic enhancers	Primary B cells from cord blood	blood
32	chr10:26743800-26746200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:26743800-26746200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:26743800-26746200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:26743800-26746400	Flanking Active TSS	GM12878-XiMat	blood
36	chr10:26743800-26747200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:26743800-26747400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr10:26744200-26744600	Weak transcription	Osteobl	bone
39	chr10:26744200-26745400	Weak transcription	Small Intestine	intestine
40	chr10:26744200-26745400	Enhancers	Thymus	Thymus

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