Variant report

Variant	rs10023786
Chromosome Location	chr4:173979038-173979039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173973154..173975649-chr4:173977335..173980311,2	MCF-7	breast:
2	chr4:173974690..173976351-chr4:173978187..173979844,2	K562	blood:
3	chr4:173973985..173977707-chr4:173978830..173981711,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10015219	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029324	1.00[AMR][1000 genomes]
rs10034056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430469	1.00[AMR][1000 genomes]
rs28537929	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28577570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696042	1.00[AMR][1000 genomes]
rs57490911	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836069	1.00[AMR][1000 genomes]
rs7663778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173975600-173979800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:173976600-173980000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:173977200-173979400	Enhancers	Stomach Mucosa	stomach
4	chr4:173977200-173979400	Enhancers	K562	blood
5	chr4:173977200-173980000	Enhancers	Fetal Muscle Leg	muscle
6	chr4:173977600-173979800	Enhancers	HSMM	muscle
7	chr4:173977800-173979200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:173978000-173979200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:173978000-173980000	Enhancers	NHDF-Ad	bronchial
10	chr4:173978400-173979200	Enhancers	Brain Angular Gyrus	brain
11	chr4:173978400-173979400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr4:173978400-173979400	Enhancers	Brain Substantia Nigra	brain
13	chr4:173978400-173979400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr4:173978400-173980400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:173978600-173979200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:173978600-173979200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:173978600-173979200	Enhancers	Brain Hippocampus Middle	brain
18	chr4:173978600-173979200	Flanking Active TSS	Osteobl	bone
19	chr4:173978600-173979400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:173978600-173980000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr4:173978800-173979400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr4:173978800-173979400	Enhancers	NHLF	lung
23	chr4:173978800-173979800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr4:173978800-173980000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr4:173979000-173979200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:173979000-173979200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:173979000-173979200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:173979000-173980000	Enhancers	HUVEC	blood vessel
29	chr4:173979000-173980200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links