Variant report

Variant	rs28577570
Chromosome Location	chr4:173977227-173977228
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173973985..173977707-chr4:173978830..173981711,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10015219	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029324	1.00[AMR][1000 genomes]
rs10034056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430469	1.00[AMR][1000 genomes]
rs28537929	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696042	1.00[AMR][1000 genomes]
rs57490911	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836069	1.00[AMR][1000 genomes]
rs7663778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173973200-173977600	Weak transcription	HSMM	muscle
2	chr4:173973200-173978600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:173973200-173978800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:173973200-173979000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:173973600-173977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:173973600-173977600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:173973600-173978000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:173973600-173978000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:173973600-173978000	Weak transcription	HSMMtube	muscle
10	chr4:173973800-173978600	Weak transcription	Osteobl	bone
11	chr4:173974000-173977400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:173975600-173977800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:173975600-173978600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:173975600-173979800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:173976400-173977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:173976600-173980000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:173977200-173977800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:173977200-173977800	Enhancers	Pancreas	Pancrea
19	chr4:173977200-173978200	Enhancers	Brain Germinal Matrix	brain
20	chr4:173977200-173978400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:173977200-173978600	Enhancers	HUVEC	blood vessel
22	chr4:173977200-173979400	Enhancers	Stomach Mucosa	stomach
23	chr4:173977200-173979400	Enhancers	K562	blood
24	chr4:173977200-173980000	Enhancers	Fetal Muscle Leg	muscle

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