Variant report

Variant	rs7663778
Chromosome Location	chr4:174029121-174029122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10015219	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022850	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023786	1.00[AMR][1000 genomes]
rs10029324	1.00[AMR][1000 genomes]
rs10034056	1.00[AMR][1000 genomes]
rs28430469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537929	1.00[AMR][1000 genomes]
rs28577570	1.00[AMR][1000 genomes]
rs28636071	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696042	1.00[AMR][1000 genomes]
rs57490911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836069	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174028000-174029200	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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