Variant report

Variant	rs10034056
Chromosome Location	chr4:173960154-173960155
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:173958508..173961349-chr4:174209739..174212375,2	MCF-7	breast:
2	chr4:173958437..173960994-chr4:173973406..173975836,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10015219	1.00[AMR][1000 genomes]
rs10022850	1.00[AMR][1000 genomes]
rs10023786	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029324	1.00[AMR][1000 genomes]
rs28430469	1.00[AMR][1000 genomes]
rs28537929	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28577570	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636071	1.00[AMR][1000 genomes]
rs28820027	1.00[AMR][1000 genomes]
rs4696042	1.00[AMR][1000 genomes]
rs57490911	1.00[AMR][1000 genomes]
rs6836069	1.00[AMR][1000 genomes]
rs7663778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173951200-173960400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:173957200-173961000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:173958800-173961800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:173959200-173960400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:173959200-173960600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:173959200-173960600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:173959200-173961000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:173959200-173961600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:173959200-173961800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:173959200-173961800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:173959200-173961800	Enhancers	Brain Germinal Matrix	brain
12	chr4:173959200-173962000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:173959200-173962000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:173959400-173960600	Enhancers	Fetal Intestine Large	intestine
15	chr4:173959400-173961000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:173959400-173961200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr4:173959400-173961600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:173959400-173961600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:173959400-173961800	Enhancers	Adipose Nuclei	Adipose
20	chr4:173959400-173961800	Enhancers	Fetal Lung	lung
21	chr4:173959400-173961800	Enhancers	Fetal Muscle Leg	muscle
22	chr4:173959600-173960200	Weak transcription	Fetal Intestine Small	intestine
23	chr4:173959600-173960200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:173959600-173960600	Enhancers	Brain Anterior Caudate	brain
25	chr4:173959600-173961200	Enhancers	Fetal Stomach	stomach
26	chr4:173959600-173961400	Weak transcription	Colonic Mucosa	Colon
27	chr4:173959600-173961400	Enhancers	A549	lung
28	chr4:173959600-173961800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:173959600-173962800	Weak transcription	Pancreas	Pancrea
30	chr4:173959600-173968000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:173959800-173960200	Weak transcription	Small Intestine	intestine
32	chr4:173959800-173960400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr4:173959800-173961000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:173959800-173961200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:173959800-173961800	Enhancers	Brain Hippocampus Middle	brain
36	chr4:173960000-173960400	Weak transcription	Stomach Mucosa	stomach
37	chr4:173960000-173960600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:173960000-173961000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:173960000-173961000	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:173960000-173961400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:173960000-173961400	Weak transcription	Fetal Kidney	kidney
42	chr4:173960000-173961600	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr4:173960000-173961800	Enhancers	HUES48 Cell Line	embryonic stem cell

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