Variant report

Variant	rs28820027
Chromosome Location	chr4:174039355-174039356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10015219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023786	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029324	1.00[AMR][1000 genomes]
rs10034056	1.00[AMR][1000 genomes]
rs28430469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28577570	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28665137	0.81[AFR][1000 genomes]
rs4696042	1.00[AMR][1000 genomes]
rs57490911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836069	1.00[AMR][1000 genomes]
rs7663778	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174037600-174040800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:174038800-174042200	Weak transcription	Esophagus	oesophagus
3	chr4:174039200-174042400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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