Variant report

Variant	rs28537929
Chromosome Location	chr4:174000205-174000206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10015219	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022850	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023786	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029324	1.00[AMR][1000 genomes]
rs10034056	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430469	1.00[AMR][1000 genomes]
rs28577570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636071	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696042	1.00[AMR][1000 genomes]
rs57490911	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836069	1.00[AMR][1000 genomes]
rs7663778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174000000-174012600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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