Variant report
| Variant | rs10024228 |
|---|---|
| Chromosome Location | chr4:45439459-45439460 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10003832 | 1.00[AMR][1000 genomes] |
| rs10020995 | 1.00[AMR][1000 genomes] |
| rs10021831 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10027285 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10034380 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13434635 | 1.00[AMR][1000 genomes] |
| rs1604146 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16858374 | 1.00[AMR][1000 genomes] |
| rs16858398 | 1.00[AMR][1000 genomes] |
| rs28408908 | 1.00[AMR][1000 genomes] |
| rs28427125 | 1.00[AMR][1000 genomes] |
| rs28557135 | 1.00[AMR][1000 genomes] |
| rs28614177 | 1.00[AMR][1000 genomes] |
| rs28670052 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28708848 | 1.00[AMR][1000 genomes] |
| rs28842612 | 1.00[AMR][1000 genomes] |
| rs28848502 | 1.00[AMR][1000 genomes] |
| rs7658157 | 1.00[AMR][1000 genomes] |
| rs7687549 | 1.00[AMR][1000 genomes] |
| rs9993645 | 1.00[AMR][1000 genomes] |
| rs9994004 | 1.00[AMR][1000 genomes] |
| rs9994653 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv594104 | chr4:45105210-45665828 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45439400-45440200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
