Variant report

Variant	rs1604146
Chromosome Location	chr4:45361105-45361106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003832	1.00[AMR][1000 genomes]
rs10020995	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434635	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858374	1.00[AMR][1000 genomes]
rs16858398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408908	1.00[AMR][1000 genomes]
rs28427125	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28557135	1.00[AMR][1000 genomes]
rs28614177	1.00[AMR][1000 genomes]
rs28670052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28708848	1.00[AMR][1000 genomes]
rs28842612	1.00[AMR][1000 genomes]
rs28848502	1.00[AMR][1000 genomes]
rs7658157	1.00[AMR][1000 genomes]
rs7687549	1.00[AMR][1000 genomes]
rs9993645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994004	1.00[AMR][1000 genomes]
rs9994653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv594107	chr4:45338240-45436394	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv525215	chr4:45355115-45374305	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45355800-45361200	Weak transcription	Fetal Brain Male	brain
2	chr4:45360600-45361200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:45360600-45363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:45360800-45361800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:45360800-45362000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:45361000-45361200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:45361000-45361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:45361000-45361600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:45361000-45363000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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