Variant report

Variant	rs28408908
Chromosome Location	chr4:45347919-45347920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003832	1.00[AMR][1000 genomes]
rs10020995	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021831	1.00[AMR][1000 genomes]
rs10024228	1.00[AMR][1000 genomes]
rs10027285	1.00[AMR][1000 genomes]
rs10034380	1.00[AMR][1000 genomes]
rs13434635	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1604146	1.00[AMR][1000 genomes]
rs16858374	1.00[AMR][1000 genomes]
rs16858398	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28427125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28557135	1.00[AMR][1000 genomes]
rs28614177	1.00[AMR][1000 genomes]
rs28670052	1.00[AMR][1000 genomes]
rs28708848	1.00[AMR][1000 genomes]
rs28842612	1.00[AMR][1000 genomes]
rs28848502	1.00[AMR][1000 genomes]
rs7658157	1.00[AMR][1000 genomes]
rs7687549	1.00[AMR][1000 genomes]
rs9993645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994004	1.00[AMR][1000 genomes]
rs9994653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv594107	chr4:45338240-45436394	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45347600-45349400	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links