Variant report

Variant	rs9993645
Chromosome Location	chr4:45351276-45351277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003832	1.00[AMR][1000 genomes]
rs10020995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024228	1.00[AMR][1000 genomes]
rs10027285	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034380	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1604146	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858374	1.00[AMR][1000 genomes]
rs16858398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408908	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28427125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28557135	1.00[AMR][1000 genomes]
rs28614177	1.00[AMR][1000 genomes]
rs28670052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28708848	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28842612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28848502	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7658157	1.00[AMR][1000 genomes]
rs7687549	1.00[AMR][1000 genomes]
rs9994004	1.00[AMR][1000 genomes]
rs9994653	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv594107	chr4:45338240-45436394	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45348000-45352000	Weak transcription	Brain Substantia Nigra	brain
2	chr4:45349400-45352400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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