Variant report

Variant	rs13434635
Chromosome Location	chr4:45352748-45352749
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003832	1.00[AMR][1000 genomes]
rs10020995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024228	1.00[AMR][1000 genomes]
rs10027285	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034380	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1604146	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16858374	1.00[AMR][1000 genomes]
rs16858398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408908	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28427125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28557135	1.00[AMR][1000 genomes]
rs28614177	1.00[AMR][1000 genomes]
rs28670052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28708848	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28842612	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28848502	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7658157	1.00[AMR][1000 genomes]
rs7687549	1.00[AMR][1000 genomes]
rs9993645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994004	1.00[AMR][1000 genomes]
rs9994653	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv594107	chr4:45338240-45436394	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45352000-45352800	Active TSS	Brain Substantia Nigra	brain
2	chr4:45352000-45353200	Enhancers	Fetal Heart	heart
3	chr4:45352200-45352800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:45352200-45352800	Active TSS	Brain Cingulate Gyrus	brain
5	chr4:45352200-45352800	Active TSS	Colon Smooth Muscle	Colon
6	chr4:45352200-45352800	Active TSS	GM12878-XiMat	blood
7	chr4:45352200-45352800	Active TSS	NHDF-Ad	bronchial
8	chr4:45352200-45353000	Active TSS	Muscle Satellite Cultured Cells	--
9	chr4:45352200-45353200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:45352200-45353200	Active TSS	Right Atrium	heart
11	chr4:45352200-45353200	Active TSS	Stomach Smooth Muscle	stomach
12	chr4:45352400-45352800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:45352400-45352800	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr4:45352400-45352800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:45352400-45352800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:45352400-45352800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:45352400-45352800	Active TSS	Aorta	Aorta
18	chr4:45352400-45352800	Active TSS	Brain Anterior Caudate	brain
19	chr4:45352400-45352800	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr4:45352400-45352800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:45352400-45352800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr4:45352400-45352800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr4:45352400-45352800	Active TSS	Fetal Lung	lung
24	chr4:45352400-45352800	Active TSS	Ovary	ovary
25	chr4:45352400-45352800	Active TSS	Psoas Muscle	Psoas
26	chr4:45352400-45352800	Active TSS	Rectal Smooth Muscle	rectum
27	chr4:45352400-45352800	Active TSS	Right Ventricle	heart
28	chr4:45352400-45352800	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr4:45352400-45352800	Flanking Active TSS	Dnd41	blood
30	chr4:45352400-45352800	Active TSS	Hela-S3	cervix
31	chr4:45352400-45352800	Active TSS	HSMM	muscle
32	chr4:45352400-45352800	Active TSS	NH-A	brain
33	chr4:45352400-45353000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:45352400-45353000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:45352400-45353000	Active TSS	HMEC	breast
36	chr4:45352400-45353200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:45352400-45353200	Enhancers	Liver	Liver
38	chr4:45352400-45353200	Active TSS	Brain Angular Gyrus	brain
39	chr4:45352400-45353200	Active TSS	Brain Hippocampus Middle	brain
40	chr4:45352400-45353200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr4:45352600-45353000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:45352600-45353000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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