Variant report

Variant	rs28614177
Chromosome Location	chr4:45442210-45442211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10003832	1.00[AMR][1000 genomes]
rs10020995	1.00[AMR][1000 genomes]
rs10021831	1.00[AMR][1000 genomes]
rs10024228	1.00[AMR][1000 genomes]
rs10027285	1.00[AMR][1000 genomes]
rs10034380	1.00[AMR][1000 genomes]
rs13434635	1.00[AMR][1000 genomes]
rs1604146	1.00[AMR][1000 genomes]
rs16858374	1.00[AMR][1000 genomes]
rs16858398	1.00[AMR][1000 genomes]
rs28408908	1.00[AMR][1000 genomes]
rs28427125	1.00[AMR][1000 genomes]
rs28557135	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670052	1.00[AMR][1000 genomes]
rs28708848	1.00[AMR][1000 genomes]
rs28842612	1.00[AMR][1000 genomes]
rs28848502	1.00[AMR][1000 genomes]
rs7658157	1.00[AMR][1000 genomes]
rs7687549	1.00[AMR][1000 genomes]
rs9993645	1.00[AMR][1000 genomes]
rs9994004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45440200-45444400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45441600-45444200	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links