The 2.0 version of rSNPBase

Variant report

Variant rs1003209
Chromosome Location chr1:93002064-93002065
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92968200-93042800 Weak transcription HSMM muscle
2 chr1:92972600-93013400 Weak transcription Ovary ovary
3 chr1:92973800-93002200 Weak transcription Fetal Intestine Large intestine
4 chr1:92976400-93042400 Weak transcription Fetal Stomach stomach
5 chr1:92977600-93010600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:92977600-93013200 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:92979600-93002200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr1:92981800-93004000 Weak transcription Fetal Adrenal Gland Adrenal Gland
9 chr1:92981800-93033400 Weak transcription NHEK skin
10 chr1:92983600-93066200 Weak transcription Adipose Nuclei Adipose
11 chr1:92986800-93002400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:92990800-93003800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:92993000-93003600 Weak transcription Fetal Intestine Small intestine
14 chr1:92993000-93007400 Weak transcription Left Ventricle heart
15 chr1:92993400-93002200 Weak transcription Primary monocytes fromperipheralblood blood
16 chr1:92993800-93003600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:92993800-93007200 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr1:92994000-93002400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:92994400-93002200 Weak transcription Liver Liver
20 chr1:92994600-93066000 Weak transcription Placenta Placenta
21 chr1:92999400-93016600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:93000600-93002200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
23 chr1:93001200-93003000 Enhancers Primary T helper cells fromperipheralblood blood
24 chr1:93001200-93003600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
25 chr1:93001400-93002200 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr1:93001400-93003400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr1:93001400-93004000 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr1:93001400-93024200 Weak transcription Psoas Muscle Psoas
29 chr1:93001600-93002800 Enhancers Primary B cells from cord blood blood
30 chr1:93001600-93004600 Enhancers Primary T killer naive cells fromperipheralblood blood
31 chr1:93001600-93004600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr1:93001800-93002200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
33 chr1:93001800-93002200 Enhancers Pancreatic Islets Pancreatic Islet
34 chr1:93001800-93002400 Flanking Active TSS Primary T cells from cord blood blood
35 chr1:93001800-93002400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
36 chr1:93001800-93002800 Enhancers Primary neutrophils fromperipheralblood blood
37 chr1:93001800-93004600 Enhancers Primary hematopoietic stem cells short term culture blood
38 chr1:93001800-93004600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
39 chr1:93001800-93004600 Enhancers HepG2 liver
40 chr1:93001800-93004800 Enhancers HUVEC blood vessel
41 chr1:93002000-93002400 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
42 chr1:93002000-93002400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
43 chr1:93002000-93002400 Flanking Active TSS GM12878-XiMat blood
44 chr1:93002000-93002800 Flanking Active TSS Dnd41 blood

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Last update: Aug 31, 2015