Variant report

Variant	rs10465755
Chromosome Location	chr1:93027955-93027956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93027014..93029326-chr1:93048258..93050872,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1003209	1.00[ASN][1000 genomes]
rs10127800	1.00[ASN][1000 genomes]
rs10159031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12563400	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564335	1.00[ASN][1000 genomes]
rs12564537	0.87[AMR][1000 genomes]
rs12564911	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12565227	0.87[AMR][1000 genomes]
rs12565259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12566527	0.84[ASN][1000 genomes]
rs12568629	0.84[ASN][1000 genomes]
rs17131655	0.87[AMR][1000 genomes]
rs2151575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41286813	0.87[AMR][1000 genomes]
rs55995837	0.87[AMR][1000 genomes]
rs56144352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56172716	0.89[EUR][1000 genomes]
rs56185219	0.81[AMR][1000 genomes]
rs56695578	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57782462	0.89[EUR][1000 genomes]
rs59459727	0.89[EUR][1000 genomes]
rs59925050	0.87[AMR][1000 genomes]
rs60855457	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61288876	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61457032	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699723	0.87[AMR][1000 genomes]
rs74101167	0.84[ASN][1000 genomes]
rs74101184	0.89[EUR][1000 genomes]
rs74101186	0.89[EUR][1000 genomes]
rs74101190	0.89[EUR][1000 genomes]
rs74101199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74101322	0.87[AMR][1000 genomes]
rs74101363	0.81[AMR][1000 genomes]
rs74102906	0.89[EUR][1000 genomes]
rs74102921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74102923	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74102948	0.89[EUR][1000 genomes]
rs74102953	0.89[EUR][1000 genomes]
rs7535171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548287	0.87[AMR][1000 genomes]
rs969698	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523354	chr1:92931263-93064823	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1004381	chr1:92968173-93064823	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92968200-93042800	Weak transcription	HSMM	muscle
2	chr1:92976400-93042400	Weak transcription	Fetal Stomach	stomach
3	chr1:92981800-93033400	Weak transcription	NHEK	skin
4	chr1:92983600-93066200	Weak transcription	Adipose Nuclei	Adipose
5	chr1:92994600-93066000	Weak transcription	Placenta	Placenta
6	chr1:93004400-93028400	Weak transcription	Primary B cells from cord blood	blood
7	chr1:93004400-93032400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:93004400-93033000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:93004400-93042200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:93004400-93042400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:93004400-93070000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:93007800-93042600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:93009800-93028200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:93009800-93029200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:93012000-93042800	Weak transcription	Left Ventricle	heart
16	chr1:93014800-93053000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:93014800-93100200	Weak transcription	Right Ventricle	heart
18	chr1:93017000-93066000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:93018600-93054600	Weak transcription	Lung	lung
20	chr1:93020000-93029400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr1:93022000-93042400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:93024200-93056000	Weak transcription	Fetal Heart	heart
23	chr1:93026000-93033600	Weak transcription	Liver	Liver
24	chr1:93026000-93091800	Weak transcription	Hela-S3	cervix
25	chr1:93027000-93043400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:93027400-93066000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:93027600-93029200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr1:93027800-93042400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:93027800-93042600	Weak transcription	NH-A	brain

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