Variant report

Variant	rs59459727
Chromosome Location	chr1:93104719-93104720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92762843..92765397-chr1:93103121..93105425,2	K562	blood:

Variant related genes	Relation type
ENSG00000122484	Chromatin interaction
ENSG00000174842	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10159031	0.89[EUR][1000 genomes]
rs10465755	0.89[EUR][1000 genomes]
rs12563400	0.89[EUR][1000 genomes]
rs12564911	0.89[EUR][1000 genomes]
rs12565259	0.89[EUR][1000 genomes]
rs2151575	0.89[EUR][1000 genomes]
rs41286805	0.87[EUR][1000 genomes]
rs41296171	0.87[EUR][1000 genomes]
rs56144352	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56172716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56406716	0.85[AFR][1000 genomes]
rs56764656	0.84[AMR][1000 genomes]
rs57782462	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59552478	0.84[AMR][1000 genomes]
rs60550001	0.87[EUR][1000 genomes]
rs60842823	1.00[AMR][1000 genomes]
rs60933677	0.87[EUR][1000 genomes]
rs61259042	1.00[AMR][1000 genomes]
rs61288876	0.89[EUR][1000 genomes]
rs61457032	0.89[EUR][1000 genomes]
rs6661028	0.87[EUR][1000 genomes]
rs6681213	0.87[EUR][1000 genomes]
rs6702975	0.87[EUR][1000 genomes]
rs6704484	0.87[EUR][1000 genomes]
rs72960860	0.87[EUR][1000 genomes]
rs72960870	0.87[EUR][1000 genomes]
rs72962640	0.87[EUR][1000 genomes]
rs74101146	0.87[EUR][1000 genomes]
rs74101152	0.87[EUR][1000 genomes]
rs74101157	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs74101184	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101186	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101190	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101199	0.89[EUR][1000 genomes]
rs74101310	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101354	0.91[AMR][1000 genomes]
rs74101356	0.91[AMR][1000 genomes]
rs74101362	0.91[AMR][1000 genomes]
rs74102903	0.85[AFR][1000 genomes]
rs74102906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102921	0.89[EUR][1000 genomes]
rs74102923	0.89[EUR][1000 genomes]
rs74102948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102953	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513631	0.87[EUR][1000 genomes]
rs7534750	0.87[EUR][1000 genomes]
rs7535171	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93052000-93119400	Weak transcription	NHEK	skin
2	chr1:93053600-93166200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:93062000-93118800	Weak transcription	HMEC	breast
4	chr1:93065200-93118600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:93065800-93119600	Weak transcription	NH-A	brain
6	chr1:93066800-93114600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:93068600-93112600	Weak transcription	Brain Substantia Nigra	brain
8	chr1:93069600-93119600	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:93082600-93108600	Weak transcription	Psoas Muscle	Psoas
10	chr1:93083600-93106400	Weak transcription	Pancreas	Pancrea
11	chr1:93089800-93114200	Weak transcription	HSMM	muscle
12	chr1:93098400-93205400	Weak transcription	NHLF	lung
13	chr1:93100600-93118600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:93101200-93114600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:93101200-93118600	Weak transcription	Aorta	Aorta
16	chr1:93101200-93118800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:93101400-93104800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:93101400-93104800	Weak transcription	Ovary	ovary
19	chr1:93101400-93118200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:93101400-93118200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:93101400-93118200	Weak transcription	Left Ventricle	heart
22	chr1:93101400-93118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:93101400-93118400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:93101400-93118400	Weak transcription	Fetal Intestine Small	intestine
25	chr1:93101400-93118400	Weak transcription	Fetal Stomach	stomach
26	chr1:93101400-93118600	Weak transcription	Lung	lung
27	chr1:93101400-93118600	Weak transcription	Right Ventricle	heart
28	chr1:93101400-93118800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:93101400-93119000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr1:93101400-93119000	Weak transcription	Gastric	stomach
31	chr1:93101600-93105400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:93101600-93118400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr1:93101600-93118600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr1:93101600-93120200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:93101600-93163600	Weak transcription	Colonic Mucosa	Colon
36	chr1:93101800-93106000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr1:93101800-93106400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr1:93101800-93106400	Weak transcription	Fetal Kidney	kidney
39	chr1:93101800-93110600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:93101800-93118200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:93101800-93118600	Weak transcription	HSMMtube	muscle
42	chr1:93101800-93119200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr1:93101800-93119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:93102000-93106400	Weak transcription	Liver	Liver
45	chr1:93102000-93106400	Weak transcription	Fetal Lung	lung
46	chr1:93102000-93109000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:93102000-93112400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:93102000-93114400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:93102000-93115200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:93102000-93117600	Weak transcription	Fetal Intestine Large	intestine

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