Variant report

Variant	rs61259042
Chromosome Location	chr1:93186043-93186044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10465757	0.89[EUR][1000 genomes]
rs12564537	0.89[EUR][1000 genomes]
rs12565227	0.89[EUR][1000 genomes]
rs17131655	0.89[EUR][1000 genomes]
rs41286805	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs41286813	0.89[EUR][1000 genomes]
rs4130290	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4442373	1.00[EUR][1000 genomes]
rs4847388	1.00[EUR][1000 genomes]
rs55995837	0.89[EUR][1000 genomes]
rs56144352	0.91[AMR][1000 genomes]
rs56172716	1.00[AMR][1000 genomes]
rs56185219	0.89[EUR][1000 genomes]
rs56406716	0.88[AFR][1000 genomes]
rs56695578	0.89[EUR][1000 genomes]
rs56764656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57782462	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59459727	1.00[AMR][1000 genomes]
rs59552478	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59925050	0.89[EUR][1000 genomes]
rs60842823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6699723	0.89[EUR][1000 genomes]
rs74101184	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs74101186	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs74101190	0.91[AMR][1000 genomes]
rs74101310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101322	0.89[EUR][1000 genomes]
rs74101354	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101356	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101362	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101363	0.89[EUR][1000 genomes]
rs74102903	0.82[AFR][1000 genomes]
rs74102906	1.00[AMR][1000 genomes]
rs74102948	1.00[AMR][1000 genomes]
rs74102953	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535486	1.00[EUR][1000 genomes]
rs7548287	0.89[EUR][1000 genomes]
rs9439942	0.89[EUR][1000 genomes]
rs969698	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123600-93213400	Weak transcription	Gastric	stomach
3	chr1:93155800-93213400	Weak transcription	Lung	lung
4	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
7	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:93170200-93189800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
10	chr1:93175800-93190200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:93177800-93197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:93181800-93196600	Weak transcription	HepG2	liver
14	chr1:93182600-93200000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:93185400-93194200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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