Variant report

Variant	rs60550001
Chromosome Location	chr1:92891233-92891234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10399671	0.87[EUR][1000 genomes]
rs12075168	0.87[EUR][1000 genomes]
rs12075243	0.87[EUR][1000 genomes]
rs12098095	0.87[EUR][1000 genomes]
rs17131632	0.87[EUR][1000 genomes]
rs17131636	0.87[EUR][1000 genomes]
rs41286805	1.00[EUR][1000 genomes]
rs41296171	1.00[EUR][1000 genomes]
rs41313389	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55993081	0.87[EUR][1000 genomes]
rs56172716	0.87[EUR][1000 genomes]
rs56297403	1.00[EUR][1000 genomes]
rs57177520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57217458	1.00[EUR][1000 genomes]
rs57782462	0.87[EUR][1000 genomes]
rs58142139	1.00[EUR][1000 genomes]
rs59278612	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59459727	0.87[EUR][1000 genomes]
rs60265386	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60755573	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60933677	1.00[EUR][1000 genomes]
rs61141829	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185080	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61410146	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6661028	1.00[EUR][1000 genomes]
rs6672838	0.87[EUR][1000 genomes]
rs6679259	0.87[EUR][1000 genomes]
rs6681213	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6683456	0.87[EUR][1000 genomes]
rs6695475	1.00[EUR][1000 genomes]
rs6702975	1.00[EUR][1000 genomes]
rs6704484	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958740	1.00[EUR][1000 genomes]
rs72958746	1.00[EUR][1000 genomes]
rs72958774	1.00[EUR][1000 genomes]
rs72958781	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958796	1.00[EUR][1000 genomes]
rs72960815	1.00[EUR][1000 genomes]
rs72960831	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960835	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960847	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960860	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960870	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960872	0.87[EUR][1000 genomes]
rs72962640	1.00[EUR][1000 genomes]
rs72962659	0.87[EUR][1000 genomes]
rs74101123	1.00[EUR][1000 genomes]
rs74101131	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101133	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101146	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101152	1.00[EUR][1000 genomes]
rs74101157	1.00[EUR][1000 genomes]
rs74101184	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101186	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74101190	0.87[EUR][1000 genomes]
rs74102844	1.00[EUR][1000 genomes]
rs74102853	1.00[EUR][1000 genomes]
rs74102861	1.00[EUR][1000 genomes]
rs74102906	0.87[EUR][1000 genomes]
rs74102948	0.87[EUR][1000 genomes]
rs74102953	0.87[EUR][1000 genomes]
rs7513631	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7519603	1.00[EUR][1000 genomes]
rs7520555	1.00[EUR][1000 genomes]
rs7520675	0.87[EUR][1000 genomes]
rs7525174	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527960	0.87[EUR][1000 genomes]
rs7529971	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534750	1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92889600-92892200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:92890000-92892000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:92890000-92892400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:92890600-92891600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:92891000-92892200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:92891200-92891400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:92891200-92892400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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