The 2.0 version of rSNPBase

Variant report

Variant rs41313389
Chromosome Location chr1:92852837-92852838
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92804400-92853200 Weak transcription NHEK skin
2 chr1:92815000-92853200 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:92818800-92853000 Weak transcription Osteobl bone
4 chr1:92823600-92853200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:92826200-92853000 Weak transcription Fetal Brain Male brain
6 chr1:92833400-92855000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr1:92833400-92856000 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr1:92834400-92855200 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr1:92835400-92855200 Weak transcription Hela-S3 cervix
10 chr1:92844200-92855600 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr1:92847000-92853200 Weak transcription Psoas Muscle Psoas
12 chr1:92847000-92853800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:92847200-92854000 Weak transcription Brain Angular Gyrus brain
14 chr1:92849600-92853200 Strong transcription Cortex derived primary cultured neurospheres brain
15 chr1:92849600-92854800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr1:92849600-92854800 ZNF genes & repeats Aorta Aorta
17 chr1:92849600-92855200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:92849800-92854000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr1:92849800-92855200 ZNF genes & repeats Fetal Intestine Small intestine
20 chr1:92850000-92855200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
21 chr1:92850200-92855000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr1:92850200-92855000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
23 chr1:92850200-92855200 ZNF genes & repeats Liver Liver
24 chr1:92850200-92855200 ZNF genes & repeats Fetal Brain Female brain
25 chr1:92850200-92855400 ZNF genes & repeats Fetal Lung lung
26 chr1:92850400-92853200 Strong transcription Fetal Stomach stomach
27 chr1:92850600-92853200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr1:92850800-92853200 Weak transcription H9 Cell Line embryonic stem cell
29 chr1:92850800-92853800 Strong transcription Primary T helper cells fromperipheralblood blood
30 chr1:92850800-92855000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr1:92851200-92854800 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr1:92851200-92855200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:92851200-92855400 Strong transcription Skeletal Muscle Female skeletal muscle
34 chr1:92851400-92853000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:92851400-92853000 Strong transcription Fetal Intestine Large intestine
36 chr1:92851400-92853200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr1:92851400-92853200 Strong transcription Thymus Thymus
38 chr1:92851400-92853200 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr1:92851400-92853600 Strong transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:92851400-92853600 Strong transcription HSMMtube muscle
41 chr1:92851400-92853800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:92851400-92853800 Strong transcription Fetal Kidney kidney
43 chr1:92851400-92853800 Strong transcription Placenta Placenta
44 chr1:92851400-92853800 Strong transcription Gastric stomach
45 chr1:92851400-92853800 Strong transcription HSMM muscle
46 chr1:92851400-92853800 Weak transcription NH-A brain
47 chr1:92851400-92854000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:92851400-92854000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:92851400-92854000 Strong transcription Rectal Mucosa Donor 31 rectum
50 chr1:92851400-92854000 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015