Variant report

Variant	rs74101123
Chromosome Location	chr1:92806381-92806382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10399671	0.87[EUR][1000 genomes]
rs12075168	0.87[EUR][1000 genomes]
rs12075243	0.87[EUR][1000 genomes]
rs12098095	0.87[EUR][1000 genomes]
rs17131632	0.87[EUR][1000 genomes]
rs17131636	0.87[EUR][1000 genomes]
rs41286805	1.00[EUR][1000 genomes]
rs41296171	1.00[EUR][1000 genomes]
rs41313389	1.00[EUR][1000 genomes]
rs55993081	0.87[EUR][1000 genomes]
rs56297403	1.00[EUR][1000 genomes]
rs57177520	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57217458	1.00[EUR][1000 genomes]
rs58142139	1.00[EUR][1000 genomes]
rs59278612	1.00[EUR][1000 genomes]
rs60265386	1.00[EUR][1000 genomes]
rs60550001	1.00[EUR][1000 genomes]
rs60755573	1.00[EUR][1000 genomes]
rs60933677	1.00[EUR][1000 genomes]
rs61141829	1.00[EUR][1000 genomes]
rs61185080	1.00[EUR][1000 genomes]
rs61410146	1.00[EUR][1000 genomes]
rs6660858	1.00[EUR][1000 genomes]
rs6661028	1.00[EUR][1000 genomes]
rs6672838	0.87[EUR][1000 genomes]
rs6679259	0.87[EUR][1000 genomes]
rs6681213	1.00[EUR][1000 genomes]
rs6683456	0.87[EUR][1000 genomes]
rs6695475	1.00[EUR][1000 genomes]
rs6702975	1.00[EUR][1000 genomes]
rs6704484	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958740	1.00[EUR][1000 genomes]
rs72958746	1.00[EUR][1000 genomes]
rs72958774	1.00[EUR][1000 genomes]
rs72958781	1.00[EUR][1000 genomes]
rs72958796	1.00[EUR][1000 genomes]
rs72960815	1.00[EUR][1000 genomes]
rs72960831	1.00[EUR][1000 genomes]
rs72960835	1.00[EUR][1000 genomes]
rs72960847	1.00[EUR][1000 genomes]
rs72960860	1.00[EUR][1000 genomes]
rs72960870	1.00[EUR][1000 genomes]
rs72960872	0.87[EUR][1000 genomes]
rs72962640	1.00[EUR][1000 genomes]
rs72962659	0.87[EUR][1000 genomes]
rs74101131	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101133	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101146	1.00[EUR][1000 genomes]
rs74101152	1.00[EUR][1000 genomes]
rs74101157	1.00[EUR][1000 genomes]
rs74101184	0.87[EUR][1000 genomes]
rs74101186	0.87[EUR][1000 genomes]
rs74101190	0.87[EUR][1000 genomes]
rs74102832	1.00[EUR][1000 genomes]
rs74102844	1.00[EUR][1000 genomes]
rs74102853	1.00[EUR][1000 genomes]
rs74102861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102906	0.87[EUR][1000 genomes]
rs7513631	1.00[EUR][1000 genomes]
rs7519603	1.00[EUR][1000 genomes]
rs7520555	1.00[EUR][1000 genomes]
rs7520675	0.87[EUR][1000 genomes]
rs7525174	1.00[EUR][1000 genomes]
rs7527960	0.87[EUR][1000 genomes]
rs7529971	1.00[EUR][1000 genomes]
rs7534750	1.00[EUR][1000 genomes]
rs7542362	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv870667	chr1:92697188-92813741	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv871352	chr1:92761127-92807238	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv870854	chr1:92765102-92807238	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv871387	chr1:92765102-92813741	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92765800-92850000	Weak transcription	Small Intestine	intestine
2	chr1:92771800-92823800	Weak transcription	Colonic Mucosa	Colon
3	chr1:92784400-92808200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:92789800-92812000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:92789800-92830600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:92790000-92815200	Weak transcription	Psoas Muscle	Psoas
7	chr1:92792400-92817400	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:92792400-92823600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:92792600-92807600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:92792600-92807800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:92792600-92812400	Weak transcription	Right Ventricle	heart
12	chr1:92792600-92815000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:92792600-92846600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:92792800-92850800	Weak transcription	Fetal Heart	heart
15	chr1:92793600-92817200	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:92793600-92823400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:92793800-92806600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:92793800-92811800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:92793800-92830200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:92794000-92823000	Weak transcription	Brain Substantia Nigra	brain
21	chr1:92794800-92807600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr1:92795000-92817600	Weak transcription	Brain Germinal Matrix	brain
23	chr1:92795000-92823000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr1:92795200-92806400	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:92795200-92806600	Weak transcription	Fetal Stomach	stomach
26	chr1:92795200-92807200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr1:92795200-92815200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:92795200-92817000	Weak transcription	Esophagus	oesophagus
29	chr1:92795200-92817000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:92795200-92823400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:92795200-92825000	Weak transcription	Aorta	Aorta
32	chr1:92795200-92825000	Weak transcription	Lung	lung
33	chr1:92795200-92830400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:92795200-92846600	Weak transcription	Gastric	stomach
35	chr1:92795200-92850200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:92795200-92851400	Weak transcription	Spleen	Spleen
37	chr1:92795400-92807000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:92795400-92825200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:92795600-92814400	Weak transcription	A549	lung
40	chr1:92795600-92825200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr1:92795600-92826400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr1:92795600-92831200	Weak transcription	NHLF	lung
43	chr1:92795800-92806600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:92795800-92806600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr1:92795800-92807800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr1:92795800-92807800	Weak transcription	Thymus	Thymus
47	chr1:92795800-92808000	Weak transcription	Ovary	ovary
48	chr1:92795800-92810800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:92795800-92817600	Weak transcription	Brain Angular Gyrus	brain
50	chr1:92795800-92817800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links