Variant report

Variant	rs61185080
Chromosome Location	chr1:92792475-92792476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10399671	0.87[EUR][1000 genomes]
rs12075168	0.87[EUR][1000 genomes]
rs12075243	0.87[EUR][1000 genomes]
rs12098095	0.87[EUR][1000 genomes]
rs17131632	0.87[EUR][1000 genomes]
rs17131636	0.87[EUR][1000 genomes]
rs41286805	1.00[EUR][1000 genomes]
rs41296171	1.00[EUR][1000 genomes]
rs41313389	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55993081	0.87[EUR][1000 genomes]
rs56297403	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57177520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57217458	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58142139	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59278612	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60265386	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60550001	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60755573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60933677	1.00[EUR][1000 genomes]
rs61141829	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61410146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6660858	1.00[EUR][1000 genomes]
rs6661028	1.00[EUR][1000 genomes]
rs6672838	0.87[EUR][1000 genomes]
rs6679259	0.87[EUR][1000 genomes]
rs6681213	1.00[EUR][1000 genomes]
rs6683456	0.87[EUR][1000 genomes]
rs6694248	0.86[AMR][1000 genomes]
rs6695475	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6702975	1.00[EUR][1000 genomes]
rs6704484	1.00[EUR][1000 genomes]
rs72958740	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958746	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958774	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958796	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960815	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960831	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960835	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960847	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960860	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960870	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960872	0.87[EUR][1000 genomes]
rs72962640	1.00[EUR][1000 genomes]
rs72962659	0.87[EUR][1000 genomes]
rs74101123	1.00[EUR][1000 genomes]
rs74101131	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101133	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74101146	1.00[EUR][1000 genomes]
rs74101152	1.00[EUR][1000 genomes]
rs74101157	1.00[EUR][1000 genomes]
rs74101184	0.87[EUR][1000 genomes]
rs74101186	0.87[EUR][1000 genomes]
rs74101190	0.87[EUR][1000 genomes]
rs74102832	1.00[EUR][1000 genomes]
rs74102844	1.00[EUR][1000 genomes]
rs74102853	1.00[EUR][1000 genomes]
rs74102861	1.00[EUR][1000 genomes]
rs74102906	0.87[EUR][1000 genomes]
rs7513631	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7519603	1.00[EUR][1000 genomes]
rs7520555	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7520675	0.87[EUR][1000 genomes]
rs7522789	0.83[AFR][1000 genomes]
rs7525174	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527960	0.87[EUR][1000 genomes]
rs7529971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534750	1.00[EUR][1000 genomes]
rs7542362	1.00[EUR][1000 genomes]
rs7542736	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv870667	chr1:92697188-92813741	Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv871352	chr1:92761127-92807238	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv870854	chr1:92765102-92807238	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv871387	chr1:92765102-92813741	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92765800-92850000	Weak transcription	Small Intestine	intestine
2	chr1:92771800-92794800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:92771800-92823800	Weak transcription	Colonic Mucosa	Colon
4	chr1:92773000-92800800	Weak transcription	NHDF-Ad	bronchial
5	chr1:92778000-92799200	Weak transcription	Hela-S3	cervix
6	chr1:92782200-92803400	Weak transcription	Stomach Mucosa	stomach
7	chr1:92784400-92808200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:92785200-92793400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:92789000-92792600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:92789000-92792600	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr1:92789600-92796000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:92789800-92812000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:92789800-92830600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:92790000-92794400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr1:92790000-92815200	Weak transcription	Psoas Muscle	Psoas
16	chr1:92790400-92794600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:92790400-92797800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:92790400-92803600	Weak transcription	HUVEC	blood vessel
19	chr1:92790600-92792800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:92790600-92793600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
21	chr1:92790800-92793400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr1:92790800-92802200	Weak transcription	HepG2	liver
23	chr1:92791000-92792600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
24	chr1:92791000-92793200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr1:92791200-92793600	ZNF genes & repeats	Dnd41	blood
26	chr1:92791200-92793800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:92791200-92795800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr1:92791400-92792600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
29	chr1:92791400-92792800	ZNF genes & repeats	GM12878-XiMat	blood
30	chr1:92791400-92794200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:92791400-92794200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr1:92791400-92794200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr1:92791400-92795400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:92791400-92795800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr1:92791600-92792600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
36	chr1:92791600-92792600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:92791600-92792600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:92791600-92792600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:92791600-92792600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:92791600-92792600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:92791600-92792600	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr1:92791600-92792600	ZNF genes & repeats	Fetal Muscle Leg	muscle
43	chr1:92791600-92792600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr1:92791600-92792600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
45	chr1:92791600-92792600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
46	chr1:92791600-92792600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr1:92791600-92792600	Strong transcription	Stomach Smooth Muscle	stomach
48	chr1:92791600-92792600	Strong transcription	A549	lung
49	chr1:92791600-92792600	ZNF genes & repeats	HSMMtube	muscle
50	chr1:92791600-92792800	ZNF genes & repeats	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links