Variant report

Variant	rs72960860
Chromosome Location	chr1:92865955-92865956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPAP2-1	chr1:92864531-92867613	ENSG00000261311.1
2	lnc-RPAP2-1	chr1:92864531-92867614	NONHSAT004455

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10399671	0.87[EUR][1000 genomes]
rs11164423	0.88[AMR][1000 genomes]
rs11166542	0.82[AMR][1000 genomes]
rs12070923	0.88[AMR][1000 genomes]
rs12075168	0.87[EUR][1000 genomes]
rs12075243	0.87[EUR][1000 genomes]
rs12078746	0.82[AMR][1000 genomes]
rs12090761	0.88[AMR][1000 genomes]
rs12098095	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12142556	0.93[AFR][1000 genomes]
rs17131621	0.82[AMR][1000 genomes]
rs17131632	0.87[EUR][1000 genomes]
rs17131636	0.87[EUR][1000 genomes]
rs41286805	1.00[EUR][1000 genomes]
rs41296171	1.00[EUR][1000 genomes]
rs41313389	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55993081	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56112620	0.80[AFR][1000 genomes]
rs56172716	0.87[EUR][1000 genomes]
rs56297403	1.00[EUR][1000 genomes]
rs56665661	0.88[AMR][1000 genomes]
rs57177520	1.00[EUR][1000 genomes]
rs57217458	1.00[EUR][1000 genomes]
rs57782462	0.87[EUR][1000 genomes]
rs57992264	0.82[AMR][1000 genomes]
rs58142139	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58176898	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58820626	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs59278612	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59459727	0.87[EUR][1000 genomes]
rs60265386	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60550001	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60755573	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60933677	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61141829	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185080	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61410146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6603970	0.88[AMR][1000 genomes]
rs6661028	1.00[EUR][1000 genomes]
rs6662381	0.83[AMR][1000 genomes]
rs6662565	0.82[AMR][1000 genomes]
rs6671543	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6672838	0.87[EUR][1000 genomes]
rs6679259	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6679419	0.80[AFR][1000 genomes]
rs6681027	0.82[AMR][1000 genomes]
rs6681213	1.00[EUR][1000 genomes]
rs6683456	0.87[EUR][1000 genomes]
rs6694248	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6695475	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6702975	1.00[EUR][1000 genomes]
rs6704484	1.00[EUR][1000 genomes]
rs72958740	1.00[EUR][1000 genomes]
rs72958746	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958774	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958781	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958796	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960815	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960831	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960835	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960847	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960870	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72960872	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72962640	1.00[EUR][1000 genomes]
rs72962659	0.87[EUR][1000 genomes]
rs74101123	1.00[EUR][1000 genomes]
rs74101131	1.00[EUR][1000 genomes]
rs74101133	1.00[EUR][1000 genomes]
rs74101146	1.00[EUR][1000 genomes]
rs74101152	1.00[EUR][1000 genomes]
rs74101157	1.00[EUR][1000 genomes]
rs74101184	0.87[EUR][1000 genomes]
rs74101186	0.87[EUR][1000 genomes]
rs74101190	0.87[EUR][1000 genomes]
rs74102844	1.00[EUR][1000 genomes]
rs74102853	1.00[EUR][1000 genomes]
rs74102861	1.00[EUR][1000 genomes]
rs74102906	0.87[EUR][1000 genomes]
rs74102948	0.87[EUR][1000 genomes]
rs7513631	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7519603	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7520555	1.00[EUR][1000 genomes]
rs7520675	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7525174	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527960	0.87[EUR][1000 genomes]
rs7529971	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7534750	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7535181	0.82[AMR][1000 genomes]
rs7546528	0.88[AMR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92863200-92874400	Weak transcription	Thymus	Thymus
2	chr1:92865400-92866200	Enhancers	Fetal Thymus	thymus
3	chr1:92865800-92866200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:92865800-92866800	Weak transcription	Dnd41	blood

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