Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10053792	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10066922	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10067680	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10070276	0.95[EUR][1000 genomes]
rs10076201	0.85[AMR][1000 genomes]
rs10080023	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13354122	0.93[EUR][1000 genomes]
rs13355655	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13357599	0.93[EUR][1000 genomes]
rs13360587	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17140120	0.87[CEU][hapmap]
rs17140176	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17140192	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140201	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28489253	0.94[EUR][1000 genomes]
rs3806914	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs59351578	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs682684	0.96[ASN][1000 genomes]
rs686664	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980625	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:115932800-115937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:115936200-115937000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:115936200-115937000	Enhancers	NH-A	brain
6	chr5:115936200-115939200	Enhancers	Fetal Lung	lung
7	chr5:115936400-115937000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:115936400-115937000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:115936400-115937000	Enhancers	HSMMtube	muscle
10	chr5:115936400-115937200	Enhancers	Colon Smooth Muscle	Colon
11	chr5:115936400-115937200	Enhancers	Ovary	ovary
12	chr5:115936600-115937000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:115936600-115938600	Weak transcription	Aorta	Aorta
14	chr5:115936800-115940600	Weak transcription	Rectal Smooth Muscle	rectum

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