Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10045872	0.95[EUR][1000 genomes]
rs10046086	0.85[AMR][1000 genomes]
rs10055012	0.84[MEX][hapmap]
rs10061055	0.95[EUR][1000 genomes]
rs10062998	0.95[EUR][1000 genomes]
rs10067680	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10075410	0.95[EUR][1000 genomes]
rs1027742	0.88[CHB][hapmap]
rs12719220	0.95[EUR][1000 genomes]
rs1345706	0.97[EUR][1000 genomes]
rs1345707	0.97[EUR][1000 genomes]
rs17140139	0.80[MEX][hapmap]
rs17140171	0.98[EUR][1000 genomes]
rs17140192	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17140201	0.80[AMR][1000 genomes]
rs1862372	0.94[CEU][hapmap];0.81[CHB][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2840113	0.88[CHB][hapmap];0.94[MEX][hapmap]
rs3806914	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs3806915	0.94[CEU][hapmap];0.88[CHB][hapmap];0.95[EUR][1000 genomes]
rs3806916	0.94[EUR][1000 genomes]
rs56257700	0.96[EUR][1000 genomes]
rs57497884	0.95[EUR][1000 genomes]
rs58364462	0.98[EUR][1000 genomes]
rs60783407	0.98[EUR][1000 genomes]
rs682684	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs686664	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6878936	0.95[EUR][1000 genomes]
rs6897765	0.95[EUR][1000 genomes]
rs6898172	0.95[EUR][1000 genomes]
rs9327010	0.95[EUR][1000 genomes]
rs9327011	0.96[EUR][1000 genomes]
rs980625	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10076201	CHKB	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:115932800-115937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:115934200-115935800	Enhancers	Fetal Lung	lung
5	chr5:115935000-115936400	Weak transcription	Aorta	Aorta

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