Variant report

Variant	rs58364462
Chromosome Location	chr5:115930267-115930268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10045872	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10053792	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10061055	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10062998	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10066922	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10067680	0.96[EUR][1000 genomes]
rs10070276	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10074788	0.95[ASN][1000 genomes]
rs10075410	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10076201	0.98[EUR][1000 genomes]
rs10080023	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1027742	0.87[ASN][1000 genomes]
rs11953558	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12719220	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13354122	0.88[ASN][1000 genomes]
rs13355655	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13357599	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13360587	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1345706	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1345707	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140171	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17140176	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17140192	0.96[EUR][1000 genomes]
rs1862372	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2840113	0.87[ASN][1000 genomes]
rs28489253	0.99[ASN][1000 genomes]
rs3806914	0.92[ASN][1000 genomes]
rs3806915	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3806916	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56257700	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57497884	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57557217	0.95[ASN][1000 genomes]
rs59351578	0.92[ASN][1000 genomes]
rs60783407	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs686664	0.96[EUR][1000 genomes]
rs6878936	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6897765	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6898172	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327010	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327011	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9327012	0.92[ASN][1000 genomes]
rs980625	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115928000-115930400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:115928200-115933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:115929200-115930400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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