Variant report

Variant	rs9327011
Chromosome Location	chr5:115920746-115920747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10045872	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10053792	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061055	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10062998	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10066922	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067680	0.94[EUR][1000 genomes]
rs10070276	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10073289	0.83[ASN][1000 genomes]
rs10074788	1.00[ASN][1000 genomes]
rs10075410	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10076201	0.96[EUR][1000 genomes]
rs10080023	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027742	0.92[ASN][1000 genomes]
rs11953558	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12719220	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13354122	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13355655	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13357599	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13360587	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1345706	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1345707	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17140120	0.83[ASN][1000 genomes]
rs17140171	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17140176	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17140192	0.94[EUR][1000 genomes]
rs1862372	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1862373	0.83[ASN][1000 genomes]
rs2840113	0.92[ASN][1000 genomes]
rs28489253	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3806914	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3806915	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3806916	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56257700	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57497884	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57557217	1.00[ASN][1000 genomes]
rs58364462	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59351578	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60783407	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs686664	0.94[EUR][1000 genomes]
rs6878936	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897765	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6898172	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73780374	0.82[ASN][1000 genomes]
rs73780375	0.82[ASN][1000 genomes]
rs9327010	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9327012	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115913200-115927200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:115918200-115921000	Enhancers	NHEK	skin
4	chr5:115919800-115920800	Weak transcription	Hela-S3	cervix
5	chr5:115919800-115921000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:115920200-115929400	Weak transcription	Pancreas	Pancrea

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