Variant report

Variant	rs56257700
Chromosome Location	chr5:115927861-115927862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115925353..115928031-chr5:115930846..115933509,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10045872	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10053792	0.84[ASN][1000 genomes]
rs10061055	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10062998	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10066922	0.84[ASN][1000 genomes]
rs10067680	0.94[EUR][1000 genomes]
rs10074788	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10075410	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10076201	0.96[EUR][1000 genomes]
rs10080023	0.84[ASN][1000 genomes]
rs1027742	0.83[ASN][1000 genomes]
rs11953558	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12719220	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13354122	0.84[ASN][1000 genomes]
rs13355655	0.83[ASN][1000 genomes]
rs13357599	0.82[ASN][1000 genomes]
rs13360587	0.87[ASN][1000 genomes]
rs1345706	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1345707	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17140171	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17140176	0.81[ASN][1000 genomes]
rs17140192	0.94[EUR][1000 genomes]
rs1862372	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2840113	0.83[ASN][1000 genomes]
rs28489253	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3806914	0.83[ASN][1000 genomes]
rs3806915	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3806916	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57497884	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57557217	0.84[ASN][1000 genomes]
rs58364462	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59351578	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60783407	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs686664	0.94[EUR][1000 genomes]
rs6878936	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6897765	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6898172	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9327010	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9327011	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9327012	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs980625	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115920200-115929400	Weak transcription	Pancreas	Pancrea
3	chr5:115926800-115929600	Weak transcription	Left Ventricle	heart
4	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle

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