Variant report

Variant	rs12719220
Chromosome Location	chr5:115915460-115915461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10045872	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10053792	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10061055	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10062998	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066922	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10067680	0.93[EUR][1000 genomes]
rs10070276	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10073289	0.84[ASN][1000 genomes]
rs10074788	0.99[ASN][1000 genomes]
rs10075410	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10076201	0.95[EUR][1000 genomes]
rs10080023	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027742	0.93[ASN][1000 genomes]
rs11953558	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13354122	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13355655	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13357599	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13360587	0.95[ASN][1000 genomes]
rs1345706	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1345707	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17140120	0.84[ASN][1000 genomes]
rs17140171	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140176	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17140192	0.93[EUR][1000 genomes]
rs1862372	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1862373	0.84[ASN][1000 genomes]
rs2840113	0.93[ASN][1000 genomes]
rs28489253	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3806914	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3806915	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3806916	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56257700	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57497884	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57557217	0.99[ASN][1000 genomes]
rs58364462	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59351578	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60783407	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs686664	0.93[EUR][1000 genomes]
rs6878936	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6897765	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6898172	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73780374	0.83[ASN][1000 genomes]
rs73780375	0.83[ASN][1000 genomes]
rs9327010	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327011	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327012	0.95[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115917800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:115912600-115916800	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:115912600-115917000	Weak transcription	Brain Substantia Nigra	brain
5	chr5:115913000-115917000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:115913000-115917800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:115913000-115919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:115913200-115927200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:115915000-115919200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:115915000-115919200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:115915000-115919600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:115915200-115916800	Weak transcription	Fetal Lung	lung
13	chr5:115915200-115920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:115915400-115915600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:115915400-115915800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links