Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10045872	0.93[EUR][1000 genomes]
rs10046086	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10061055	0.93[EUR][1000 genomes]
rs10062998	0.93[EUR][1000 genomes]
rs10067680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10075410	0.93[EUR][1000 genomes]
rs10076201	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12719220	0.93[EUR][1000 genomes]
rs1345706	0.94[EUR][1000 genomes]
rs1345707	0.94[EUR][1000 genomes]
rs17140171	0.95[EUR][1000 genomes]
rs17140201	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1862372	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs3806915	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs3806916	0.92[EUR][1000 genomes]
rs56257700	0.94[EUR][1000 genomes]
rs57497884	0.93[EUR][1000 genomes]
rs58364462	0.96[EUR][1000 genomes]
rs60783407	0.95[EUR][1000 genomes]
rs682684	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs686664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6878936	0.93[EUR][1000 genomes]
rs6897765	0.93[EUR][1000 genomes]
rs6898172	0.93[EUR][1000 genomes]
rs9327010	0.93[EUR][1000 genomes]
rs9327011	0.94[EUR][1000 genomes]
rs980625	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:115936200-115939200	Enhancers	Fetal Lung	lung
4	chr5:115936400-115937200	Enhancers	Colon Smooth Muscle	Colon
5	chr5:115936400-115937200	Enhancers	Ovary	ovary
6	chr5:115936600-115938600	Weak transcription	Aorta	Aorta
7	chr5:115936800-115940600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:115937000-115939000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:115937000-115939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:115937000-115940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:115937000-115941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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