Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10046086	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10053792	0.88[EUR][1000 genomes]
rs10055012	0.89[MEX][hapmap]
rs10066922	0.88[EUR][1000 genomes]
rs10067680	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10070276	0.90[EUR][1000 genomes]
rs10076201	0.80[AMR][1000 genomes]
rs10080023	0.88[EUR][1000 genomes]
rs13354122	0.88[EUR][1000 genomes]
rs13355655	0.86[EUR][1000 genomes]
rs13357599	0.88[EUR][1000 genomes]
rs13360587	0.87[EUR][1000 genomes]
rs17140120	0.87[CEU][hapmap];0.83[MEX][hapmap]
rs17140176	0.90[EUR][1000 genomes]
rs17140192	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1862372	0.84[MEX][hapmap]
rs2840113	0.89[MEX][hapmap]
rs28489253	0.89[EUR][1000 genomes]
rs3806914	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs59351578	0.89[EUR][1000 genomes]
rs682684	0.88[ASN][1000 genomes]
rs686664	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs980625	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115936800-115940600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:115937000-115940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:115937000-115941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:115938600-115940600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:115938800-115941200	Weak transcription	Aorta	Aorta
7	chr5:115939000-115943000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:115939200-115940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:115939200-115941000	Weak transcription	Fetal Lung	lung
10	chr5:115939400-115941800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:115939800-115941600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:115939800-115942200	Enhancers	Colon Smooth Muscle	Colon
13	chr5:115939800-115949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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