Variant report

Variant	rs980625
Chromosome Location	chr5:115935727-115935728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10046086	1.00[ASN][1000 genomes]
rs10067680	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10076201	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1345706	0.81[EUR][1000 genomes]
rs1345707	0.81[EUR][1000 genomes]
rs17140171	0.80[EUR][1000 genomes]
rs17140192	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140201	0.88[ASN][1000 genomes]
rs56257700	0.80[EUR][1000 genomes]
rs58364462	0.81[EUR][1000 genomes]
rs60783407	0.82[EUR][1000 genomes]
rs682684	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs686664	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:115932800-115937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:115934200-115935800	Enhancers	Fetal Lung	lung
5	chr5:115935000-115936400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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