Variant report

Variant	rs17140171
Chromosome Location	chr5:115929189-115929190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10045872	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10053792	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10061055	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10062998	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10066922	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10067680	0.95[EUR][1000 genomes]
rs10070276	0.93[ASN][1000 genomes]
rs10074788	0.96[ASN][1000 genomes]
rs10075410	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076201	0.98[EUR][1000 genomes]
rs10080023	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1027742	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs11953558	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12719220	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13354122	0.90[ASN][1000 genomes]
rs13355655	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13357599	0.94[ASN][1000 genomes]
rs13360587	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1345706	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1345707	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17140176	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140192	0.95[EUR][1000 genomes]
rs1862372	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1862373	0.80[ASN][1000 genomes]
rs2840113	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs28489253	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806914	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs3806915	0.95[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3806916	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56257700	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57497884	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57557217	0.96[ASN][1000 genomes]
rs58364462	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59351578	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60783407	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs686664	0.95[EUR][1000 genomes]
rs6878936	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6897765	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6898172	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9327010	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9327011	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9327012	0.93[ASN][1000 genomes]
rs980625	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115920200-115929400	Weak transcription	Pancreas	Pancrea
3	chr5:115926800-115929600	Weak transcription	Left Ventricle	heart
4	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:115928000-115930200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:115928000-115930400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:115928200-115933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:115929000-115930000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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