Variant report

Variant	rs10062998
Chromosome Location	chr5:115918646-115918647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115917337..115919885-chr5:115943048..115944630,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10045872	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10053792	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10055012	0.85[GIH][hapmap];0.84[MEX][hapmap]
rs10061055	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066922	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10067680	0.93[EUR][1000 genomes]
rs10070276	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10073289	0.85[ASN][1000 genomes]
rs10074788	0.98[ASN][1000 genomes]
rs10075410	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10076201	0.95[EUR][1000 genomes]
rs10080023	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1027742	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs11953558	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12719220	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13354122	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13355655	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13357599	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13360587	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1345706	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1345707	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17140120	0.81[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs17140139	0.80[MEX][hapmap]
rs17140171	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17140176	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17140192	0.93[EUR][1000 genomes]
rs1862372	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1862373	0.81[ASN][1000 genomes]
rs2840113	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];0.94[ASN][1000 genomes]
rs28489253	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3806914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3806915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3806916	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56257700	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57497884	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57557217	0.98[ASN][1000 genomes]
rs58364462	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59351578	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs60783407	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs686664	0.93[EUR][1000 genomes]
rs6878936	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6897765	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6898172	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73780374	0.84[ASN][1000 genomes]
rs73780375	0.84[ASN][1000 genomes]
rs9327010	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9327011	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9327012	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115913000-115919000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:115913200-115927200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:115915000-115919200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:115915000-115919200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:115915000-115919600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:115915200-115920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:115916800-115920000	Enhancers	Fetal Lung	lung
9	chr5:115917000-115919800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:115918000-115919600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:115918200-115919400	Enhancers	Fetal Kidney	kidney
12	chr5:115918200-115921000	Enhancers	NHEK	skin
13	chr5:115918400-115919600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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