Variant report

Variant	rs10045872
Chromosome Location	chr5:115919275-115919276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115917337..115919885-chr5:115943048..115944630,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10053792	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10061055	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10062998	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066922	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10067680	0.93[EUR][1000 genomes]
rs10070276	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10073289	0.82[ASN][1000 genomes]
rs10074788	0.99[ASN][1000 genomes]
rs10075410	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10076201	0.95[EUR][1000 genomes]
rs10080023	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027742	0.91[ASN][1000 genomes]
rs11953558	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12719220	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13354122	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13355655	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13357599	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13360587	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1345706	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1345707	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17140120	0.82[ASN][1000 genomes]
rs17140171	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140176	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17140192	0.93[EUR][1000 genomes]
rs1862372	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1862373	0.82[ASN][1000 genomes]
rs2840113	0.91[ASN][1000 genomes]
rs28489253	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3806914	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3806915	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3806916	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56257700	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57497884	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57557217	0.99[ASN][1000 genomes]
rs58364462	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59351578	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60783407	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs686664	0.93[EUR][1000 genomes]
rs6878936	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6897765	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6898172	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73780374	0.81[ASN][1000 genomes]
rs73780375	0.81[ASN][1000 genomes]
rs9327010	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327011	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327012	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115913200-115927200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:115915000-115919600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:115915200-115920600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:115916800-115920000	Enhancers	Fetal Lung	lung
6	chr5:115917000-115919800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:115918000-115919600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:115918200-115919400	Enhancers	Fetal Kidney	kidney
9	chr5:115918200-115921000	Enhancers	NHEK	skin
10	chr5:115918400-115919600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:115918800-115920000	Enhancers	HUVEC	blood vessel
12	chr5:115919000-115919400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:115919000-115919600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:115919000-115919600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:115919200-115919600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr5:115919200-115919800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:115919200-115919800	Enhancers	Hela-S3	cervix
18	chr5:115919200-115920000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr5:115919200-115920200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:115919200-115920200	Enhancers	HMEC	breast
21	chr5:115919200-115920400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links