Variant report

Variant	rs17140176
Chromosome Location	chr5:115929508-115929509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10045872	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10046086	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10053792	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10061055	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10062998	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10066922	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070276	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10073289	0.82[EUR][1000 genomes]
rs10074788	0.96[ASN][1000 genomes]
rs10075410	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10080023	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1027742	0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs11953558	0.94[ASN][1000 genomes]
rs12719220	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13354122	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13355655	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13357599	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13360587	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1345706	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1345707	0.94[ASN][1000 genomes]
rs17140120	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17140171	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140201	0.90[EUR][1000 genomes]
rs1862372	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1862373	0.80[ASN][1000 genomes]
rs2840113	0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs28489253	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806914	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3806915	0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3806916	0.93[ASN][1000 genomes]
rs56257700	0.81[ASN][1000 genomes]
rs57497884	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57557217	0.96[ASN][1000 genomes]
rs58364462	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59351578	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60783407	0.81[AMR][1000 genomes]
rs6878936	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6897765	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6898172	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73780374	0.82[EUR][1000 genomes]
rs73780375	0.82[EUR][1000 genomes]
rs9327010	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9327011	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9327012	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115912400-115930000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:115926800-115929600	Weak transcription	Left Ventricle	heart
3	chr5:115926800-115940600	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:115928000-115930200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:115928000-115930400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:115928200-115933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:115928400-115938200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:115929000-115930000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr5:115929200-115930400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:115929400-115929600	Enhancers	Fetal Heart	heart

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