Variant report
| Variant | rs10061088 |
|---|---|
| Chromosome Location | chr5:35723861-35723862 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10051352 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10054231 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10058394 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10064115 | 0.80[AMR][1000 genomes] |
| rs10069273 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10069346 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10071844 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10071847 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10077049 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10077176 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10079960 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13328131 | 1.00[CHD][hapmap] |
| rs13357738 | 0.80[AMR][1000 genomes] |
| rs28619956 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs286444 | 1.00[CHD][hapmap] |
| rs452060 | 1.00[CHD][hapmap] |
| rs6451210 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6862961 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes] |
| rs6891096 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs7703587 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7703605 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap] |
| rs7714298 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7714839 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7734377 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv515831 | chr5:35706279-35723861 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35723800-35724000 | Active TSS | Primary T killer naive cells fromperipheralblood | blood |
